D.Sc. (Tech.) Abdulmelik Mohammed

Postdoctoral Researcher

Surface mail

Aalto University School of Science
Department of Computer Science
P.O. Box 15400, FI-00076 Aalto, Finland

E-mail

firstname.lastname@aalto.fi

Research Interests

• Algorithms, combinatorics, computational complexity, nucleic acid self-assembly and nanotechnology.

Research Group

Natural Computation

Publications

E. Benson, A. Mohammed, D. Rayneau-Kirkhope, A. Gådin, P. Orponen, and B. Högberg. Effects of design choices on the stiffness of wireframe DNA origami structures. ACS Nano, 12(9):9291--9299, 2018.

A. Mohammed, P. Orponen, and S. Pai. Algorithmic design of cotranscriptionally folding 2D RNA origami structures. In Proceedings, International Conference on Unconventional Computation and Natural Computation (UCNC17), volume 10867 of LNCS, pages 159--172. Springer, 2018. Best paper award.

A. Mohammed, E. Czeizler, E. Czeizler. Computational modelling of the kinetic tile assembly model using a rule-based approach. Theoretical Computer Science, 701:203--215, 2017.

A. Mohammed, M. Hajij. Unknotted strand routings of triangulated meshes. In Proceedings, 23rd International Conference on DNA computing and Molecular Programming (DNA23), volume 10467 of LNCS, pages 46--63. Springer, 2017.

E. Benson, A. Mohammed, A. Bosco, A. Teixeira, P. Orponen, B. Högberg. Computer-aided production of scaffolded DNA nanostructures from flat sheet meshes. Angewandte Chemie, 55(31):8869--8872, 2016.

E. Benson, A. Mohammed, J. Gardell, S. Masich, E. Czeizler, P. Orponen, B. Högberg. DNA rendering of polyhedral meshes at the nanoscale. Nature, 523(7561):441--444, 2015. Web of Science highly cited paper.

Teaching Assistance

CS-E4530 (T-79.5103) Computational Complexity Theory (Spring 2018, Spring 2016, Spring 2015)

CS-E3190 (T-79.4202) Principles of Algorithmic Techniques (Autumn 2017, Autumn 2016, Autumn 2015, Autumn 2014, Autumn 2013)

T-79.5205 Combinatorics (Spring 2014)

T-79.5101 Advanced Course in Computational Logic (Autumn 2013)