- Kostic Aleksandar D., Gevers Dirk, Siljander Heli, Vatanen Tommi, Hyötyläinen Tuulia, Hämäläinen Anu-Maaria, Peet Aleksandr, Tillmann Vallo, Poho Päivi, Mattila Ismo, Lähdesmäki Harri, Franzosa Eric A., Vaarala Outi, de Goffay Marcus, Harmsen Hermie, Ilonen Jorma, Virtanen Suvi M., Clish Clary B., Oresic Matej, Huttenhower Curtis, Knip Mikael, Xavier Ramnik J.. The Dynamics of the Human Infant Gut Microbiome in Development and in Progression toward Type 1 Diabetes. Cell Host & Microbe, 17(2):260-273, 2015. [More info] [BibTeX]
@article{
chm2015,
author = {Kostic, Aleksandar D. and Gevers, Dirk and Siljander, Heli and Vatanen, Tommi and Hy{\"o}tyl\"ainen, Tuulia and H\"am\"al\"ainen, Anu-Maaria and Peet, Aleksandr and Tillmann, Vallo and P\"oh\"o, P\"aivi and Mattila, Ismo and L\"ahdesm\"aki, Harri and Franzosa, Eric A. and Vaarala, Outi and de Goffay, Marcus and Harmsen, Hermie and Ilonen, Jorma and Virtanen, Suvi M. and Clish, Clary B. and Oresic, Matej and Huttenhower, Curtis and Knip, Mikael and Xavier, Ramnik J.},
responsibleauthor = "Vatanen, Tommi",
doi = "http://dx.doi.org/10.1016/j.chom.2015.01.001",
language = "eng",
title = "The Dynamics of the Human Infant Gut Microbiome in Development and in Progression toward Type 1 Diabetes",
url = "http://www.sciencedirect.com/science/article/pii/S1931312815000219",
journal = "Cell Host & Microbe",
issn = "1931-3128",
number = "2",
volume = "17",
juforank = "1",
flags = "CSB puclic",
il = "yes",
year = "2015",
unitcode = "T306-100",
kay = "A,C",
impactfactor = "A1",
pages = "260-273"
}
- Vatanen Tommi, Osmala Maria, Raiko Tapani, Lagus Krista, Sysi-Aho Marko, Oresic Matej, Honkela Timo, Lähdesmäki Harri. Self-organization and missing values in SOM and GTM. Neurocomputing, 147(1):60-70, 2015. [More info] [BibTeX]
@article{
neurocomputing2015,
author = {Vatanen, Tommi and Osmala, Maria and Raiko, Tapani and Lagus, Krista and Sysi-Aho, Marko and Oresic, Matej and Honkela, Timo and L\"{a}hdesm\"{a}ki, Harri},
note = "Advances in Self-Organizing Maps Subtitle of the special issue: Selected Papers from the Workshop on Self-Organizing Maps 2012 (WSOM 2012)",
doi = "http://dx.doi.org/10.1016/j.neucom.2014.02.061",
responsibleauthor = "Vatanen, Tommi",
language = "eng",
title = "Self-organization and missing values in SOM and GTM",
url = "http://www.sciencedirect.com/science/article/pii/S0925231214007127",
country = "Netherlands",
journal = "Neurocomputing",
issn = "0925-2312",
number = "1",
volume = "147",
juforank = "1",
flags = "CSB public TRITON",
il = "yes",
year = "2015",
unitcode = "T306-100",
kay = "C",
impactfactor = "A1",
pages = "60-70"
}
- Lagus Krista, Vatanen Tommi, Kettunen Oili, Heikkilä Antti, Heikkilä Matti, Pantzar Mika, Honkela Timo. Paths of Wellbeing on Self-Organizing Maps. In Advances in Self-Organizing Maps, pages 345-352, 2013. [BibTeX]
@inproceedings{
lagus2012,
author = {Lagus, Krista and Vatanen, Tommi and Kettunen, Oili and Heikkil\"{a}, Antti and Heikkil\"{a}, Matti and Pantzar, Mika and Honkela, Timo},
juforank = "1",
isbn = "978-3-642-35229-4",
language = "eng",
title = "Paths of Wellbeing on Self-Organizing Maps",
booktitle = "Advances in Self-Organizing Maps",
responsibleauthor = "Lagus, Krista",
flags = "COG AIRC public copy",
il = "no",
eventdetails = "International Workshop on Self-organizing Map, (WSOM 2012), Santiago, Chile, 12 - 14 December 2012",
year = "2013",
unitcode = "T306-100",
kay = "NA",
impactfactor = "A4",
pages = "345-352"
}
- Vatanen Tommi, Nieminen Ilari T., Honkela Timo, Raiko Tapani, Lagus Krista. Controlling Self-Organization and Handling Missing Values in SOM and GTM. In Advances in Self-Organizing Maps, pages 55-64, 2013. [BibTeX]
@inproceedings{
wsom2012,
author = "Vatanen, Tommi and Nieminen, Ilari T. and Honkela, Timo and Raiko, Tapani and Lagus, Krista",
juforank = "1",
isbn = "978-3-642-35229-4",
language = "eng",
title = "Controlling Self-Organization and Handling Missing Values in SOM and GTM",
country = "Germany",
booktitle = "Advances in Self-Organizing Maps",
responsibleauthor = "Vatanen, Tommi",
flags = "COG AIRC CSB public",
il = "no",
eventdetails = "International Workshop on Self-organizing Map, (WSOM 2012), Santiago, Chile, 12 - 14 December 2012",
year = "2013",
unitcode = "T306-100",
kay = "NA",
impactfactor = "A4",
pages = "55-64"
}
- Vatanen Tommi, Raiko Tapani, Valpola Harri, LeCun Yann. Pushing Stochastic Gradient towards Second-Order Methods - Backpropagation Learning with Transformations in Nonlinearities. In Neural Information Processing , volume 8226 of Lecture Notes in Computer Science, pages 442-449, 2013. [BibTeX]
@inproceedings{
Vatanen13ICONIP,
author = "Vatanen, Tommi and Raiko, Tapani and Valpola, Harri and LeCun, Yann",
volume = "8226",
language = "eng",
title = "Pushing Stochastic Gradient towards Second-Order Methods - Backpropagation Learning with Transformations in Nonlinearities",
series = "Lecture Notes in Computer Science",
booktitle = "Neural Information Processing (ICONIP 2013)",
year = "2013",
corerank = "A",
month = "Nov",
responsibleauthor = "Tommi Vatanen",
juforank = "1",
flags = "CSB COIN public",
il = "yes",
address = "Daegu, Korea",
unitcode = "T306",
kay = "NA",
impactfactor = "A4",
pages = "442--449"
}
- Vatanen Tommi, Raiko Tapani, Valpola Harri, LeCun Yann. Pushing Stochastic Gradient towards Second-Order Methods - Backpropagation Learning with Transformations in Nonlinearities. 2013. [BibTeX]
@misc{
Vatanen13ICLR,
author = "Vatanen, Tommi and Raiko, Tapani and Valpola, Harri and LeCun, Yann",
juforank = "-",
language = "eng",
title = "Pushing Stochastic Gradient towards Second-Order Methods - Backpropagation Learning with Transformations in Nonlinearities",
booktitle = "workshop of the International Conference on Learning Representations (ICLR 2013)",
year = "2013",
month = "May",
responsibleauthor = "Tommi Vatanen",
flags = "COIN copy",
il = "yes",
address = "Scottsdale, Arizona",
unitcode = "T306",
kay = "NA",
impactfactor = "B3",
corerank = "-"
}
- Vatanen Tommi, Heikkilä Matti, Honkela Timo, Kettunen Oili, Lagus Krista, Pantzar Mika. Kuntotiedot kartalle - erilaiset hyvä- ja huonokuntoisten ryhmät näkyviin. Liikunta & Tiede, 49(2-3):48-53, 2012. [BibTeX]
@article{
liikuntajatiede,
author = {Vatanen, Tommi and Heikkil\"{a}, Matti and Honkela, Timo and Kettunen, Oili and Lagus, Krista and Pantzar, Mika},
volume = "49",
language = "fin",
title = {Kuntotiedot kartalle - erilaiset hyv\"{a}- ja huonokuntoisten ryhm\"{a}t n\"{a}kyviin},
country = "Finland",
journal = "Liikunta & Tiede",
issn = "0358-7010",
number = "2-3",
responsibleauthor = "Vatanen, Tommi",
juforank = "1",
il = "no",
year = "2012",
unitcode = "T306-100",
impactfactor = "B1",
pages = "48-53",
flags = "AIRC COG public"
}
- Vatanen Tommi, Kuusela Mikael, Malmi Eric, Raiko Tapani, Aaltonen Timo, Nagai Yoshikazu. Semi-Supervised Detection of Collective Anomalies with an Application in High Energy Particle Physics. In IJCNN 2012, International Joint Conference on Neural Networks, pages 1-8, 2012. [BibTeX]
@inproceedings{
vatanen2012b,
author = "Vatanen, Tommi and Kuusela, Mikael and Malmi, Eric and Raiko, Tapani and Aaltonen, Timo and Nagai, Yoshikazu",
juforank = "1",
eventtime = "June 11-15",
language = "eng",
title = "Semi-Supervised Detection of Collective Anomalies with an Application in High Energy Particle Physics",
eventlocation = "Brisbane, Australia",
country = "United States",
booktitle = "IJCNN 2012, International Joint Conference on Neural Networks",
responsibleauthor = "Vatanen, Tommi",
flags = "AIRC COG csb public",
il = "yes",
year = "2012",
unitcode = "T306-100",
impactfactor = "A4",
pages = "1-8"
}
- Vatanen Tommi. Missing Value Imputation Using Subspace Methods with Applications on Survey Data. 2012. [BibTeX]
@mastersthesis{
vatanen2012a,
author = "Vatanen, Tommi",
pdf = "mthesis_vatanen.pdf",
school = "Aalto University",
address = "Espoo, Finland",
year = "2012",
title = "Missing Value Imputation Using Subspace Methods with Applications on Survey Data"
}
- Kuusela Mikael, Malmi Eric, Orava Risto, Vatanen Tommi. Soft Classification of Diffractive Interactions at the LHC. AIP Conference Proceedings, 1350(1):111-114, 2011. [Pdf] [BibTeX]
@article{
Kuusela2010c,
editor = "Capua, Marcella and Fiore, Roberto and Ivanov, Igor and Papa, Alessandro and Soffer, Jacques and Tassi, Enrico",
author = "Kuusela, Mikael and Malmi, Eric and Orava, Risto and Vatanen, Tommi",
publisher = "AIP",
title = "Soft Classification of Diffractive Interactions at the {LHC}",
journal = "AIP Conference Proceedings",
number = "1",
volume = "1350",
flags = "AIRC COG public copy",
year = "2011",
pdf = "Kuusela2011diff.pdf",
pages = "111-114"
}
- Vatanen Tommi, Kuusela Mikael, Malmi Eric, Raiko Tapani, Aaltonen Timo, Nagai Yoshikazu. Fixed-Background EM Algorithm for Semi-Supervised Anomaly Detection. Report Aalto University School of Science, 2011. Pdf] [BibTeX]
@techreport{
Vatanen2011a,
author = "Vatanen, Tommi and Kuusela, Mikael and Malmi, Eric and Raiko, Tapani and Aaltonen, Timo and Nagai, Yoshikazu",
pdf = "Vatanen2011aaltoSci.pdf",
year = "2011",
flags = "AIRC COG public",
institution = "Aalto University School of Science",
title = "Fixed-Background {EM} Algorithm for Semi-Supervised Anomaly Detection"
}
- Kuusela Mikael, Malmi Eric, Orava Risto, Vatanen Tommi. Soft Classification of Diffractive Interactions at the LHC. In Proceedings of Diffraction 2010, 2010. American Institute of Physics [Pdf] [BibTeX]
@inproceedings{
Kuusela10,
author = "Kuusela, Mikael and Malmi, Eric and Orava, Risto and Vatanen, Tommi",
publisher = "American Institute of Physics",
title = "Soft Classification of Diffractive Interactions at the {LHC}",
booktitle = "Proceedings of Diffraction 2010",
flags = "AIRC COG public",
year = "2010",
pdf = "kuusela10diffraction.pdf"
}
- Kuusela Mikeal, Malmi Eric, Vatanen Tommi, Orava Risto, Aaltonen Timo, Nagai Yoshikazu. Detection of New Physics Using Density Estimation Based Anomaly Search. 2010. [More info] [BibTeX]
@misc{
cdfnote,
author = "Kuusela, Mikeal and Malmi, Eric and Vatanen, Tommi and Orava, Risto and Aaltonen, Timo and Nagai, Yoshikazu",
note = "CDF Internal Note. CDF/DOC/EXOTIC/CDFR/10227",
url = "http://www-cdf.fnal.gov/publications/cdf10227_anomaly_search.pdf",
year = "2010",
flags = "AIRC COG copy public",
title = "Detection of New Physics Using Density Estimation Based Anomaly Search"
}
- Vatanen Tommi, Kuusela Mikael, Malmi Eric, Orava Risto. Anomaly Search with Density Estimation and EM algorithm. 2010. [BibTeX]
@misc{
Vatanen2010a,
author = "Vatanen, Tommi and Kuusela, Mikael and Malmi, Eric and Orava, Risto",
title = "Anomaly Search with Density Estimation and {EM} algorithm",
month = "September",
note = "Poster",
flags = "AIRC COG public",
year = "2010",
howpublished = "6th International Summer School on Pattern Recognition, ISSPR 2010"
}
- Vatanen Tommi, Väyrynen Jaakko J., Virpioja Sami. Language identification of short text segments with n-gram models. In Proceedings of the Seventh conference on International Language Resources and Evaluation , pages 3423-3430, 2010. European Language Resources Association (ELRA) [Pdf] [BibTeX]
@inproceedings{
Vatanen10LREC,
author = {Vatanen, Tommi and V{\"{a}}yrynen, Jaakko J. and Virpioja, Sami},
publisher = "European Language Resources Association (ELRA)",
resposibleauthor = "Vatanen, Tommi",
title = "Language identification of short text segments with n-gram models",
booktitle = "Proceedings of the Seventh conference on International Language Resources and Evaluation (LREC'10)",
corerank = "NA",
pages = "3423--3430",
flags = "AIRC COG public",
year = "2010",
pdf = "vatanen10lrec.pdf",
impactfactor = "A4",
opteditor = "Nicoletta Calzolari (Conference Chair) and Khalid Choukri and Bente Maegaard and Joseph Mariani and Jan Odijk and Stelios Piperidis"
}